DMR Analysis
 Demo result
Time used: 283.8 hours
 Workflow
Important Notification´╝Ü
(1) DMRs: Differentially Methylated Regions (DMRs) between two different samples.
(2) Only WGBS analysis result is accepted.
Choose sample job ID
Type two job IDs for searching DMRs.
Use test data     Sample1 job ID
    Sample2 job ID
Reference preparation
Please choose the reference in drop down list.
Species
Methods to identify DMRs
User could try different parameters to get proper result.
For CG
a. Static window method
  -p p-value  
  -fdr FDR correction  
  -c the minimum sequence coverage rate
  -f the minimum delta methylation level
b. Dynamic window method
  -w CG number in one window  
  -s CG number in a step  
  -p p-value  
  -m the minimum percent of CG coverage in one test window
  -f the minimum delta methylation level
For CH (H = A, T, C)
Static window method
-l base number in one window   
  -n window number considered for each test  
  -p p-value  
-f the minimum delta methylation level  
  -fdr FDR correction  
  -c the minimum sequence coverage rate
For C
  a. Static window method
  -p p-value  
  -fdr FDR correction  
  -c the minimum sequence coverage rate
  -f the minimum delta methylation level
b. Dynamic windows method
  -w C base number in one window  
  -s C base number in a step  
  -p p-value  
  -m the minimum percent of C base coverage in one test window
  -f the minimum delta methylation level
Email
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