WGBS | RRBS | DMR | |
---|---|---|---|
Package |
wgbs_pipeline_custom.tar.gz (774 MB) [download] |
rrbs_pipeline_custom.tar.gz (223 MB) [download] |
dmr_pipeline_custom.tar.gz (1.4 GB) [download] |
Document |
wbsa_prerequisites.pdf [download] wgbs_pipeline_custom.pdf [download] |
wbsa_prerequisites.pdf [download] rrbs_pipeline_custom.pdf [download] |
wbsa_prerequisites.pdf [download] dmr_pipeline_custom.pdf [download] |
Required software |
BWA 0.6.1 [download] Samtools 0.1.8 [download] Perl 5.8.8 [download] R 2.11 [download] |
BWA 0.6.1 [download] Samtools 0.1.8 [download] Perl 5.8.8 [download] R 2.11 [download] |
Perl 5.8.8 [download] R 2.11 [download] |
Required libraries |
Perl modules: GD::Graph GD::Text Text::NSP RSPerl Others: GO.tar.gz [download] |
Perl modules: GD::Graph GD::Text Text::NSP RSPerl Others: GO.tar.gz [download] |
|
Linux system environment required | GCC[download] JDK 1.6.0 [download] MySQL 5.0 [download] | ||
References |
Genome Reference [FTP] |
WGBS | RRBS | DMR | |
---|---|---|---|
Package |
wgbs_pipeline_pbs.tar.gz (622 MB) [download] |
rrbs_pipeline_pbs.tar.gz (199 MB) [download] |
dmr_pipeline_pbs.tar.gz (1.3 GB) [download] |
Document |
wbsa_prerequisites.pdf [download] wgbs_pipeline_pbs.pdf [download] |
wbsa_prerequisites.pdf [download] rrbs_pipeline_pbs.pdf [download] |
wbsa_prerequisites.pdf [download] dmr_pipeline_pbs.pdf [download] |
Required software |
BWA 0.6.1 [download] Samtools 0.1.8 [download] Perl 5.8.8 [download] R 2.11 [download] |
BWA 0.6.1 [download] Samtools 0.1.8 [download] Perl 5.8.8 [download] R 2.11 [download] |
Perl 5.8.8 [download] R 2.11 [download] |
Required libraries |
Perl modules: GD::Graph GD::Text Text::NSP RSPerl Others: Corona_Lite_Plus.tar.gz [download] GO.tar.gz [download] |
Perl modules: GD::Graph GD::Text Text::NSP RSPerl Others: Corona_Lite_Plus.tar.gz [download] GO.tar.gz [download] |
|
Linux system environment required | GCC[download] JDK 1.6.0 [download] MySQL 5.0 [download] | ||
References |
Genome Reference [FTP] |