Downloads

	WGBS	RRBS	DMR
Package	wgbs_pipeline_custom.tar.gz (774 MB) [download]	rrbs_pipeline_custom.tar.gz (223 MB) [download]	dmr_pipeline_custom.tar.gz (1.4 GB) [download]
Document	wbsa_prerequisites.pdf [download] wgbs_pipeline_custom.pdf [download]	wbsa_prerequisites.pdf [download] rrbs_pipeline_custom.pdf [download]	wbsa_prerequisites.pdf [download] dmr_pipeline_custom.pdf [download]
Required software	BWA 0.6.1 [download] Samtools 0.1.8 [download] Perl 5.8.8 [download] R 2.11 [download]	BWA 0.6.1 [download] Samtools 0.1.8 [download] Perl 5.8.8 [download] R 2.11 [download]	Perl 5.8.8 [download] R 2.11 [download]
Required libraries	Perl modules: GD::Graph GD::Text Text::NSP RSPerl Others: GO.tar.gz [download]	Perl modules: GD::Graph GD::Text Text::NSP RSPerl Others: GO.tar.gz [download]
Linux system environment required	GCC[download] JDK 1.6.0 [download] MySQL 5.0 [download]
References	Genome Reference [FTP]

	WGBS	RRBS	DMR
Package	wgbs_pipeline_pbs.tar.gz (622 MB) [download]	rrbs_pipeline_pbs.tar.gz (199 MB) [download]	dmr_pipeline_pbs.tar.gz (1.3 GB) [download]
Document	wbsa_prerequisites.pdf [download] wgbs_pipeline_pbs.pdf [download]	wbsa_prerequisites.pdf [download] rrbs_pipeline_pbs.pdf [download]	wbsa_prerequisites.pdf [download] dmr_pipeline_pbs.pdf [download]
Required software	BWA 0.6.1 [download] Samtools 0.1.8 [download] Perl 5.8.8 [download] R 2.11 [download]	BWA 0.6.1 [download] Samtools 0.1.8 [download] Perl 5.8.8 [download] R 2.11 [download]	Perl 5.8.8 [download] R 2.11 [download]
Required libraries	Perl modules: GD::Graph GD::Text Text::NSP RSPerl Others: Corona_Lite_Plus.tar.gz [download] GO.tar.gz [download]	Perl modules: GD::Graph GD::Text Text::NSP RSPerl Others: Corona_Lite_Plus.tar.gz [download] GO.tar.gz [download]
Linux system environment required	GCC[download] JDK 1.6.0 [download] MySQL 5.0 [download]
References	Genome Reference [FTP]